Welcome to ebtrack’s documentation!

Some tools for tracking of egyptian blue in a layer of drosophila embryos. Specifically designed to match experiments in this preprint, but can probably be useful for other tracking as well.

All of it relies on great libraries like numpy, pandas, trackpy, matplotlib, click etc. We are very greatful for all developers of python and these great projects! Keep up the good work!

Contents:

• Install
• Analysis Workflow
  • Extract Trajectories
  • Compute MSD
  • Find Nuclei
  • Proximity Analysis
  • Velocity Plots
  • Vanhove Plot

License

Copyright (c) 2019 Ilyas Kuhlemann, Gabriele Selvaggio, Niklas Herrmann

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.

Indices and tables

• Index
• Module Index
• Search Page